The new cross-platform and open source Nexus Mods App is coming along with their team now formally announcing the Stardew Valley Preview. With support for Linux / Steam Deck baked right in.
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I tried it a month or two ago, and it just didn’t work very well. If other Linux users are looking for a mod manager, I’ve been happy with Limo.
How on earth I never heard about this, great recommendation.
I haven’t gotten Limo to work at all. I ended up deleting it and using Mod Organiser through Steam Tinker Launcher.